Statistical Analysis of Genetic and Gene Expression Data MolPAGE
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Programme

Sunday – 19 March 2006
   
17.00:19.00 Registration
   
19.00:20.00 Welcome cocktail

 

Monday – 20 March 2006
 
DESIGN OF GENE EXPRESSION EXPERIMENTS
9.00:9.20 Introduction Luisa Bernardinelli
9.20:10.20 Systematic Microarray Data Analysis: an overview Jürgen von Frese
10.20:10.45 Coffee break
10.45:11.45 Assessment of the quality of micro-array data Ursula Sauer
11.45:13.00 Design of micro-array based studies Ernst Wit
13.00:14.15 Lunch
14.15:15:15 Data normalization and standardization Ben Bolstad
15.15:15.40 Coffee break
15.40:17.00 Practicals at computer Ben Bolstad, Arief Gusnanto, Brian Tom

 

Tuesday – 21 March 2006
 
GENE EXPRESSION ANALYSIS AND MULTIPLE TESTING
9.00:10.20 Model-based analysis of micro-array data Ernst Wit
10.20:11.20 Analysis of micro-array data using mixture mixed model Arief Gusnanto
11.20:11.40 Coffee break
11.40:13.00 Multiple testing , False Discovery Rate, sample size and sensitivity for micro-array studies (Part 1) Yudi Pawitan
13.00:14.00 Lunch
14.15:15:00 Multiple testing , False Discovery Rate, sample size and sensitivity for micro-array studies (Part 2) Yudi Pawitan
15.00:15.20 Coffee break
15.20:17.30 Practicals at computer Yudi Pawitan, Arief Gusnanto, Brian Tom

 

Wednesday – 22 March 2006
 
FROM SEQUENCE INFORMATION TO GENE EXPRESSION
9.00:10.00 SNPs, HAPMAP, genomic pattern of linkage disequilibrium Krina Zondervan
10.00:11.00 Multi-stage analysis in SNP and gene expression based studies Jaya Satagopan
11.00:11.20 Coffee break
11.20:12.30 Locating polymorphic determinants of gene expression Richard Spielman
12.30:13.30 Integrating DNA motif discovery and genome-wide
expression analysis
Erin Conlon
13.30:14:00 Lunch
  Afternoon free

 

Thursday – 23 March 2006
 
BIOLOGICAL NETWORKS
9.00:10.20 Conditional independence modelling of biological networks Carlo Berzuini
10.20:11.20 Combining Markov Networks David Edwards
11.20:11.40 Coffee break
11.40:13.00 Integrative genomics approaches for inferring causal associations
between gene expression and disease
Solveig Sieberts
13.00:14.15 Lunch
14.15:15:30 Identification of DNA regulatory motifs using Bayesian variable selection Marina Vannucci
15.30:15.50 Coffee break
15.50:17.00 Locating polymorphic determinants of cell function differentiation Brian Tom

 

Friday – 24 March 2006
 
ADVANCED TOPICS
9.00:10.10 Bayesian Analysis of time –course gene expression data Chris Holmes 
10.10:11.20 Patient classification and prediction
based on transcript profiling
David M. Rocke
11.20:11.40 Coffee break
11.40:13.00 Gene Selection in Sample Classification
and Clustering based on High-Throughput Data

Marina Vannucci
13.00:14.00 Lunch
14.00:15.00 Integrated transcriptional profiling and QTL mapping for identification of genes underlying disease John Whittaker
15.00:15.30 Coffee break
15.30:16.30 Deciphering the regulatory recipe for differentiating human epithelial cells Jennifer Taylor
  Closure of workshop